Publications

2022

2021

Featured
Quantifying the importance and location of SARS-CoV-2 transmission events in large metropolitan areas
Quantifying the importance and location of SARS-CoV-2 transmission events in large metropolitan areas
Markov Genealogy Processes
Markov Genealogy Processes
Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
Challenges of evaluating and modelling vaccination in emerging infectious diseases
Challenges of evaluating and modelling vaccination in emerging infectious diseases
Transition to endemicity: Understanding COVID-19
Transition to endemicity: Understanding COVID-19
Durability of protection after 5 doses of acellular pertussis vaccine among 5–9 year old children in King County, Washington
Durability of protection after 5 doses of acellular pertussis vaccine among 5–9 year old children in King County, Washington
Association of Diphtheria-Tetanus–Acellular Pertussis Vaccine Timeliness and Number of Doses With Age-Specific Pertussis Risk in Infants and Young Children
Association of Diphtheria-Tetanus–Acellular Pertussis Vaccine Timeliness and Number of Doses With Age-Specific Pertussis Risk in Infants and Young Children
Using simulated infectious disease outbreaks to inform site selection and sample size for individually randomized vaccine trials during an ongoing epidemic
Using simulated infectious disease outbreaks to inform site selection and sample size for individually randomized vaccine trials during an ongoing epidemic
Modeling the impacts of clinical influenza testing on influenza vaccine effectiveness estimates
Modeling the impacts of clinical influenza testing on influenza vaccine effectiveness estimates
Estimating population-level effects of the acellular pertussis vaccine using routinely collected immunization data
Estimating population-level effects of the acellular pertussis vaccine using routinely collected immunization data
Inverse probability weighted estimators of vaccine effects accommodating partial interference and censoring
Inverse probability weighted estimators of vaccine effects accommodating partial interference and censoring
Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave in 2 Europe and the United States
Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave in 2 Europe and the United States
Estimating and interpreting secondary attack risk: Binomial considered biased
Estimating and interpreting secondary attack risk: Binomial considered biased
Inferring high-resolution human mixing patterns for disease modeling
Inferring high-resolution human mixing patterns for disease modeling
Cost-effectiveness of live-attenuated influenza vaccination among school-age children
Cost-effectiveness of live-attenuated influenza vaccination among school-age children

2020

Featured
Household Transmission of SARS-CoV-2: A Systematic Review and Meta-analysis
Household Transmission of SARS-CoV-2: A Systematic Review and Meta-analysis
Estimates of inactivated influenza vaccine effectiveness among children in Senegal: results from two consecutive cluster-randomized controlled trials in 2010 and 2011
Estimates of inactivated influenza vaccine effectiveness among children in Senegal: results from two consecutive cluster-randomized controlled trials in 2010 and 2011
Ensemble forecast modeling for the design of COVID-19 vaccine efficacy trials
Ensemble forecast modeling for the design of COVID-19 vaccine efficacy trials
Zika virus infection enhances future risk of severe dengue disease
Zika virus infection enhances future risk of severe dengue disease
Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19
Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19
Achieving coordinated national immunity and cholera elimination in Haiti through vaccination: a modelling study
Achieving coordinated national immunity and cholera elimination in Haiti through vaccination: a modelling study
Estimating the establishment of local transmission and the cryptic phase of the COVID-19 pandemic in the USA
Estimating the establishment of local transmission and the cryptic phase of the COVID-19 pandemic in the USA
Household secondary attack rate of COVID-19 and associated determinants in Guangzhou, China: a retrospective cohort study
Household secondary attack rate of COVID-19 and associated determinants in Guangzhou, China: a retrospective cohort study
The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak
The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak
Creating a Framework for Conducting Randomized Clinical Trials during Disease Outbreaks
Creating a Framework for Conducting Randomized Clinical Trials during Disease Outbreaks
Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study
Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study
Aggregated mobility data could help fight COVID-19
Aggregated mobility data could help fight COVID-19
Detecting critical slowing down in high-dimensional epidemiological systems
Detecting critical slowing down in high-dimensional epidemiological systems
Inferring high-resolution human mixing patterns for disease modeling
Inferring high-resolution human mixing patterns for disease modeling
Evolving epidemiology of novel coronavirus diseases 2019 and possible interruption of local transmission outside Hubei Province in China: a descriptive and modeling study
Evolving epidemiology of novel coronavirus diseases 2019 and possible interruption of local transmission outside Hubei Province in China: a descriptive and modeling study
Designing effective control of dengue with combined interventions
Designing effective control of dengue with combined interventions
Designing a Study of Correlates of Risk for Ebola Vaccination
Designing a Study of Correlates of Risk for Ebola Vaccination
Preliminary assessment of the International Spreading Risk Associated with the 2019 novel Coronavirus (2019-nCoV) outbreak in Wuhan City
Preliminary assessment of the International Spreading Risk Associated with the 2019 novel Coronavirus (2019-nCoV) outbreak in Wuhan City
Potential Test-Negative Case-Control Study Bias in Outbreak Settings: Application to Ebola vaccination in Democratic Republic of Congo
Potential Test-Negative Case-Control Study Bias in Outbreak Settings: Application to Ebola vaccination in Democratic Republic of Congo

2019

Featured
Survival dynamical systems: individual-level survival analysis from population-level epidemic models
Survival dynamical systems: individual-level survival analysis from population-level epidemic models
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia
The contribution of host cell-directed vs. parasite-directed immunity to the disease and dynamics of malaria infections
The contribution of host cell-directed vs. parasite-directed immunity to the disease and dynamics of malaria infections
Is there really more flu in the south? Surveillance systems show differences in influenza activity across regions.
Is there really more flu in the south? Surveillance systems show differences in influenza activity across regions.
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin
Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin
Serostatus testing and dengue vaccine cost–benefit thresholds
Serostatus testing and dengue vaccine cost–benefit thresholds
Age-structure and transient dynamics in epidemiological systems
Age-structure and transient dynamics in epidemiological systems
Estimating the cost of illness and burden of disease associated with the 2014–2015 chikungunya outbreak in the U.S. Virgin Islands
Estimating the cost of illness and burden of disease associated with the 2014–2015 chikungunya outbreak in the U.S. Virgin Islands
Recombinant vector vaccine evolution
Recombinant vector vaccine evolution
Within-host infectious disease models accommodating cellular coinfection, with an application to influenza
Within-host infectious disease models accommodating cellular coinfection, with an application to influenza
Design of vaccine efficacy trials during public health emergencies
Design of vaccine efficacy trials during public health emergencies
A general framework for modelling the impact of co-infections on pathogen evolution
A general framework for modelling the impact of co-infections on pathogen evolution
Characterization of antibody and memory T-cell response in H7N9 survivors: a cross-sectional analysis
Characterization of antibody and memory T-cell response in H7N9 survivors: a cross-sectional analysis
Evaluating the probability of silent circulation of polio in small populations using the silent circulation statistic
Evaluating the probability of silent circulation of polio in small populations using the silent circulation statistic
Panel data analysis via mechanistic models
Panel data analysis via mechanistic models
Successes and failures of the live-attenuated influenza vaccine, can we do better?
Successes and failures of the live-attenuated influenza vaccine, can we do better?
A Spatio-Temporal Modeling Framework for Surveillance Data of Multiple Infectious Pathogens With Small Laboratory Validation Sets
A Spatio-Temporal Modeling Framework for Surveillance Data of Multiple Infectious Pathogens With Small Laboratory Validation Sets
Estimating effective population size changes from preferentially sampled genetic sequences
Estimating effective population size changes from preferentially sampled genetic sequences
Effects of infection history on dengue virus infection and pathogenicity
Effects of infection history on dengue virus infection and pathogenicity
Fitting stochastic epidemic models to gene genealogies using linear noise approximation
Fitting stochastic epidemic models to gene genealogies using linear noise approximation
Impact of rotavirus vaccine introduction in children less than 2 years of age presenting for medical care with diarrhea in rural Matlab, Bangladesh
Impact of rotavirus vaccine introduction in children less than 2 years of age presenting for medical care with diarrhea in rural Matlab, Bangladesh

2018 continued

2018

Featured
Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants
Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants
Heterogeneity and longevity of antibody memory to viruses and vaccines
Heterogeneity and longevity of antibody memory to viruses and vaccines
Rethinking the efficacy of acellular pertussis vaccines for primary immunization
Rethinking the efficacy of acellular pertussis vaccines for primary immunization
Consistency and convergence rate of phylogenetic inference via regularization
Consistency and convergence rate of phylogenetic inference via regularization
Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks
Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks
Forecasting the effectiveness of indoor residual spraying for reducing dengue burden
Forecasting the effectiveness of indoor residual spraying for reducing dengue burden
Transmission-clearance trade-offs indicate that dengue virulence evolution depends on epidemiological context
Transmission-clearance trade-offs indicate that dengue virulence evolution depends on epidemiological context
Transmissibility of Norovirus in Urban versus Rural Households in a Large Community Outbreak in China
Transmissibility of Norovirus in Urban versus Rural Households in a Large Community Outbreak in China
How single mutations affect viral escape from broad and narrow antibodies to H1 influenza hemagglutinin
How single mutations affect viral escape from broad and narrow antibodies to H1 influenza hemagglutinin
Influenza A(H7N9) Virus Antibody Responses in Survivors 1 Year after Infection, China, 2017
Influenza A(H7N9) Virus Antibody Responses in Survivors 1 Year after Infection, China, 2017
The impact of past vaccination coverage and immunity on pertussis resurgence
The impact of past vaccination coverage and immunity on pertussis resurgence
High dimensional random walks can appear low dimensional: application to influenza H3N2 evolution
High dimensional random walks can appear low dimensional: application to influenza H3N2 evolution
Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks in Merida, Mexico
Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks in Merida, Mexico
Design of vaccine trials during outbreaks with and without a delayed vaccination comparator
Design of vaccine trials during outbreaks with and without a delayed vaccination comparator
Modeling and Inference for Infectious Disease Dynamics: A Likelihood-Based Approach
Modeling and Inference for Infectious Disease Dynamics: A Likelihood-Based Approach
Seroprevalence of Dengue Antibodies in Three Urban Settings in Yucatan, Mexico
Seroprevalence of Dengue Antibodies in Three Urban Settings in Yucatan, Mexico
Considerations for the design of vaccine efficacy trials during public health emergencies
Considerations for the design of vaccine efficacy trials during public health emergencies
An Assessment of Household and Individual-Level Mosquito Prevention Methods during the Chikungunya Virus Outbreak in the United States Virgin Islands, 2014–2015
An Assessment of Household and Individual-Level Mosquito Prevention Methods during the Chikungunya Virus Outbreak in the United States Virgin Islands, 2014–2015
Core pertussis transmission groups in England and Wales: A tale of two eras
Core pertussis transmission groups in England and Wales: A tale of two eras
Resilience management during large-scale epidemic outbreaks
Resilience management during large-scale epidemic outbreaks

2017 CONTINUED

2017

Featured
Silent circulation of poliovirus in small populations
Silent circulation of poliovirus in small populations
What Controls the Acute Viral Infection Following Yellow Fever Vaccination?
What Controls the Acute Viral Infection Following Yellow Fever Vaccination?
Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
Spatio-Temporal Analysis of Surveillance Data
Spatio-Temporal Analysis of Surveillance Data
Evolution-informed forecasting of seasonal influenza A (H3N2)
Evolution-informed forecasting of seasonal influenza A (H3N2)
Resource-driven encounters among consumers and implications for the spread of infectious disease
Resource-driven encounters among consumers and implications for the spread of infectious disease
Efficient Data Augmentation for Fitting Stochastic Epidemic Models to Prevalence Data
Efficient Data Augmentation for Fitting Stochastic Epidemic Models to Prevalence Data
A Surrogate Function for One-Dimensional Phylogenetic Likelihoods
A Surrogate Function for One-Dimensional Phylogenetic Likelihoods
The RAPIDD Ebola forecasting challenge: Model description and synthetic data generation
The RAPIDD Ebola forecasting challenge: Model description and synthetic data generation
Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017.
Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017.
The RAPIDD ebola forecasting challenge: Synthesis and lessons learnt
The RAPIDD ebola forecasting challenge: Synthesis and lessons learnt
Dependency of Vaccine Efficacy on Pre-Exposure and Age: A Closer Look at a Tetravalent Dengue Vaccine
Dependency of Vaccine Efficacy on Pre-Exposure and Age: A Closer Look at a Tetravalent Dengue Vaccine
Birth/birth-death processes and their computable transition probabilities with biological applications
Birth/birth-death processes and their computable transition probabilities with biological applications
Monte Carlo profile confidence intervals for dynamic systems
Monte Carlo profile confidence intervals for dynamic systems
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Zika virus evolution and spread in the Americas
Zika virus evolution and spread in the Americas
Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus
Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus
Spread of Zika virus in the Americas
Spread of Zika virus in the Americas
Controlling cholera in the Ouest Department of Haiti using oral vaccines
Controlling cholera in the Ouest Department of Haiti using oral vaccines
Maternal pertussis immunisation: clinical gains and epidemiological legacy
Maternal pertussis immunisation: clinical gains and epidemiological legacy
Infectious Disease Dynamics Inferred from Genetic Data via Sequential Monte Carlo
Infectious Disease Dynamics Inferred from Genetic Data via Sequential Monte Carlo
Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA
Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA
Complete mapping of viral escape from neutralizing antibodies
Complete mapping of viral escape from neutralizing antibodies
Perspectives on model forecasts of the 2014–2015 Ebola epidemic in West Africa: lessons and the way forward
Perspectives on model forecasts of the 2014–2015 Ebola epidemic in West Africa: lessons and the way forward
Dynamics affecting the risk of silent circulation when oral polio vaccination is stopped
Dynamics affecting the risk of silent circulation when oral polio vaccination is stopped
Persistent Arthralgia Associated with Chikungunya Virus Outbreak, US Virgin Islands, December 2014–February 2016
Persistent Arthralgia Associated with Chikungunya Virus Outbreak, US Virgin Islands, December 2014–February 2016
Locally Adaptive Smoothing with Markov Random Fields and Shrinkage Priors
Locally Adaptive Smoothing with Markov Random Fields and Shrinkage Priors
Genome sequencing reveals Zika virus diversity and spread in the Americas
Genome sequencing reveals Zika virus diversity and spread in the Americas
The effective rate of influenza reassortment is limited during human infection
The effective rate of influenza reassortment is limited during human infection
Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus
Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus

2016 continued

2016

Featured
Eradicating infectious disease using weakly transmissible vaccines
Eradicating infectious disease using weakly transmissible vaccines
Statistical inference in partially observed stochastic compartmental models with application to cell lineage tracking of in vivo hematopoiesis
Statistical inference in partially observed stochastic compartmental models with application to cell lineage tracking of in vivo hematopoiesis
A second-order iterated smoothing algorithm
A second-order iterated smoothing algorithm
Impact of Age and Sex on CD4+ Cell Count Trajectories following Treatment Initiation: An Analysis of the Tanzanian HIV Treatment Database
Impact of Age and Sex on CD4+ Cell Count Trajectories following Treatment Initiation: An Analysis of the Tanzanian HIV Treatment Database
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification
The First Reported Outbreak of Chikungunya in the U.S. Virgin Islands, 2014–2015
The First Reported Outbreak of Chikungunya in the U.S. Virgin Islands, 2014–2015
Spatiotemporal dynamics of the Ebola epidemic in Guinea and implications for vaccination and disease elimination: a computational modeling analysis
Spatiotemporal dynamics of the Ebola epidemic in Guinea and implications for vaccination and disease elimination: a computational modeling analysis
Spatial spread of the West Africa Ebola epidemic
Spatial spread of the West Africa Ebola epidemic
Projected spread of Zika virus in the Americas
Projected spread of Zika virus in the Americas
Predictive modeling of cholera outbreaks in Bangladesh
Predictive modeling of cholera outbreaks in Bangladesh
Extrapolating theoretical efficacy of inactivated influenza A/H5N1 virus vaccine from human immunogenicity studies
Extrapolating theoretical efficacy of inactivated influenza A/H5N1 virus vaccine from human immunogenicity studies
The epidemiology and transmissibility of Zika virus in Girardot and San Andres island, Colombia, September 2015 to January 2016
The epidemiology and transmissibility of Zika virus in Girardot and San Andres island, Colombia, September 2015 to January 2016
Multi-epitope Models Explain How Preexisting Antibodies Affect the Generation of Broadly Protective Responses to Influenza
Multi-epitope Models Explain How Preexisting Antibodies Affect the Generation of Broadly Protective Responses to Influenza
Accurate Measurement of the Effects of All Amino-Acid Mutations on Influenza Hemagglutinin
Accurate Measurement of the Effects of All Amino-Acid Mutations on Influenza Hemagglutinin
Clinical, epidemiological and virological characteristics of the first detected human case of avian influenza A(H5N6) virus
Clinical, epidemiological and virological characteristics of the first detected human case of avian influenza A(H5N6) virus
Projected Impact of Dengue Vaccination in Yucatán, Mexico.
Projected Impact of Dengue Vaccination in Yucatán, Mexico.
Mathematical Model Reveals the Role of Memory CD8 T Cell Populations in Recall Responses to Influenza
Mathematical Model Reveals the Role of Memory CD8 T Cell Populations in Recall Responses to Influenza
Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees
Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees
Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses
Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses
Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world
Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world
Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone
Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone
Using age-stratified incidence data to examine the transmission consequences of pertussis vaccination
Using age-stratified incidence data to examine the transmission consequences of pertussis vaccination
Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture
Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture
Transmissibility and Pathogenicity of Ebola Virus: A Systematic Review and Meta-analysis of Household Secondary Attack Rate and Asymptomatic Infection
Transmissibility and Pathogenicity of Ebola Virus: A Systematic Review and Meta-analysis of Household Secondary Attack Rate and Asymptomatic Infection
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
Quantifying and mitigating the effect of preferential sampling on phylodynamic inference
Quantifying and mitigating the effect of preferential sampling on phylodynamic inference
Hemagglutinin Gene Clade 3C.2a Influenza A(H3N2) Viruses, Alachua County, Florida, USA, 2014–15
Hemagglutinin Gene Clade 3C.2a Influenza A(H3N2) Viruses, Alachua County, Florida, USA, 2014–15
The pertussis enigma: reconciling epidemiology, immunology and evolution
The pertussis enigma: reconciling epidemiology, immunology and evolution

2015

Featured
Seasonality and the effectiveness of mass vaccination
Seasonality and the effectiveness of mass vaccination
Cholera Outbreak in Grande Comore: 1998–1999
Cholera Outbreak in Grande Comore: 1998–1999
Cholera Transmission in Ouest Department of Haiti: Dynamic Modeling and the Future of the Epidemic
Cholera Transmission in Ouest Department of Haiti: Dynamic Modeling and the Future of the Epidemic
The role of influenza in the epidemiology of pneumonia
The role of influenza in the epidemiology of pneumonia
The effects of a deleterious mutation load on patterns of influenza A/H3N2’s antigenic evolution in humans
The effects of a deleterious mutation load on patterns of influenza A/H3N2’s antigenic evolution in humans
Epidemic processes in complex networks
Epidemic processes in complex networks
Positive selection in CD8+ T-cell epitopes of influenza nucleoprotein revealed by a comparative analysis of human and swine viral lineages
Positive selection in CD8+ T-cell epitopes of influenza nucleoprotein revealed by a comparative analysis of human and swine viral lineages
Efficacy and effectiveness of an rVSV-vectored vaccine expressing Ebola surface glycoprotein: interim results from the Guinea ring vaccination cluster-randomised trial
Efficacy and effectiveness of an rVSV-vectored vaccine expressing Ebola surface glycoprotein: interim results from the Guinea ring vaccination cluster-randomised trial
The ring vaccination trial: a novel cluster randomised controlled trial design to evaluate vaccine efficacy and effectiveness during outbreaks, with special reference to Ebola
The ring vaccination trial: a novel cluster randomised controlled trial design to evaluate vaccine efficacy and effectiveness during outbreaks, with special reference to Ebola
Masking of antigenic epitopes by antibodies shapes the humoral immune response to influenza
Masking of antigenic epitopes by antibodies shapes the humoral immune response to influenza
Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing
Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing
Crossing the scale from within-host infection dynamics to between-host transmission fitness: a discussion of current assumptions and knowledge
Crossing the scale from within-host infection dynamics to between-host transmission fitness: a discussion of current assumptions and knowledge
nextflu: Real-time tracking of seasonal influenza virus evolution in humans
nextflu: Real-time tracking of seasonal influenza virus evolution in humans
One versus two doses: What is the best use of vaccine in an influenza pandemic?
One versus two doses: What is the best use of vaccine in an influenza pandemic?
Unraveling the Transmission Ecology of Polio
Unraveling the Transmission Ecology of Polio
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
Synonymous and nonsynonymous distances help untangle convergent evolution and recombination
Synonymous and nonsynonymous distances help untangle convergent evolution and recombination
Global circulation patterns of seasonal influenza viruses vary with antigenic drift
Global circulation patterns of seasonal influenza viruses vary with antigenic drift
Dynamics of Pertussis Transmission in the United States
Dynamics of Pertussis Transmission in the United States
Software for the analysis and visualization of deep mutational scanning data
Software for the analysis and visualization of deep mutational scanning data
The dengue vaccine pipeline: Implications for the future of dengue control
The dengue vaccine pipeline: Implications for the future of dengue control
The contribution of neighbours to an individual's risk of typhoid outcome
The contribution of neighbours to an individual's risk of typhoid outcome
Vaccine Testing: Ebola and beyond
Vaccine Testing: Ebola and beyond
Household Transmissibility of Avian Influenza A (H7N9) Virus, China, February to May 2013 and October 2013 to March 2014
Household Transmissibility of Avian Influenza A (H7N9) Virus, China, February to May 2013 and October 2013 to March 2014
Transmissibility of tuberculosis among school contacts: An outbreak investigation in a boarding middle school, China
Transmissibility of tuberculosis among school contacts: An outbreak investigation in a boarding middle school, China
Avoidable errors in the modeling of outbreaks of emerging pathogens, with special reference to Ebola
Avoidable errors in the modeling of outbreaks of emerging pathogens, with special reference to Ebola
The Spatiotemporal Expansion of Human Rabies and Its Probable Explanation in Mainland China, 2004-2013
The Spatiotemporal Expansion of Human Rabies and Its Probable Explanation in Mainland China, 2004-2013
Combating Pertussis Resurgence: One Booster Vaccination Schedule Doesn't Fit All.
Combating Pertussis Resurgence: One Booster Vaccination Schedule Doesn't Fit All.
Inference for dynamic and latent variable models via iterated, perturbed Bayes maps
Inference for dynamic and latent variable models via iterated, perturbed Bayes maps
Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis
Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis

2014